Category: Cells

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Automating Cellular Image Analysis to Find Potential Medicines

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A professional photo of Dr. Carpenter.
Dr. Anne Carpenter. Credit: Juliana Sohn.

When she started college, Anne Carpenter, Ph.D., never guessed she’d one day create software for analyzing images of cells that would help identify potential medicines and that thousands of researchers would use. She wasn’t planning to become a computational biologist, or even to focus on science at all, but she’s now an institute scientist and the senior director of the Imaging Platform at the Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard in Cambridge.

Starting Out in Science

Before beginning her undergraduate studies at Purdue University in West Lafayette, Indiana, Dr. Carpenter’s strongest interests were reading and writing. Then, her subjects expanded. “In college, I liked science as much as anything else, and I realized that was unusual, as a lot of other people really struggled with it. I decided to pursue science because I enjoyed it and the field had good job prospects,” she says. Dr. Carpenter majored in biology because she felt it had the “juiciest questions” as well as a direct impact on human health.

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Slideshow: Circles of Life

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Every year on March 14, many people eat pie in honor of Pi Day. Mathematically speaking, pi (π) is the ratio of a circle’s circumference (the distance around the outside) to its diameter (the length from one side of the circle to the other, straight through the center). That means if you divide the circumference of any circle by its diameter, the solution will always be pi, which is roughly 3.14—hence March 14, or 3/14. But pi is an irrational number, which means that the numbers after the decimal point never end. With the help of computers, mathematicians have determined trillions of digits of pi.

To celebrate Pi Day, check out this slideshow of circular microbes, research organisms, and laboratory tools (while you enjoy your pie, of course!). To explore more scientific photos, videos, and illustrations, visit our image and video gallery.

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Propelling Rare Disease Research for More Than 50 Years

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Many small, plastic vials, one of which a robot arm is lifting from an illuminated tray.
Vials of samples from the NIGMS HGCR. Credit: Coriell Institute for Medical Research.

The year 2022 marked 50 years since the creation of the NIGMS Human Genetic Cell Repository (HGCR) at the Coriell Institute for Medical Research in Camden, New Jersey. The NIGMS HGCR consists of cell lines and DNA samples with a focus on those from people with rare, heritable diseases. “Many rare diseases now have treatments because of the samples in the NIGMS HGCR,” says Nahid Turan, Ph.D., Coriell’s chief biobanking officer and co-principal investigator of the NIGMS HGCR. She gives the example of a rare disease advocacy group who worked with the NIGMS HGCR to establish a cell line several decades ago. It was used to identify a gene associated with the disease, which aided in the development of five treatments that have received approval from the Food and Drug Administration.

Researchers have also studied NIGMS HGCR’s samples to help advance knowledge of basic biology and genetics, and even to support the development of a vaccine for a deadly virus.

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Career Conversations: Q&A With Evolutionary Biologist William Ratcliff

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Dr. Ratcliff wearing a lab coat and safety goggles and sitting at a microscope.
Dr. William Ratcliff. Credit: Courtesy of Dr. William Ratcliff.

“Being a researcher is special because there aren’t many jobs that allow you to spend the majority of your time thinking about the things you find the most interesting in the whole world,” says William Ratcliff, Ph.D., an associate professor of biological sciences and the director of the interdisciplinary graduate program in quantitative biosciences at Georgia Institute of Technology (Georgia Tech) in Atlanta. We talked with Dr. Ratcliff about his career path, research on yeast, and advice to budding scientists.

Q: How did you first become interested in science?

A: My family owns land in Northern California that has been passed down for more than 100 years. When I was a child, my brother and I would spend summers on that land getting lost in the woods. We would really see the forest for its parts: seeing how organisms interacted with one other, tracking stages of development, and listening to birdcalls. My grandmother would identify plants by their scientific names, and we’d discuss their reproduction strategies. We became amateur natural historians during those summers. Perhaps it’s no surprise my brother and I both got Ph.Ds. in biology.

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Five Outstanding Stories From 2022

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Throughout 2022, we shared the stories of dozens of NIGMS-supported researchers, trainees, and programs. We also highlighted new STEM education resources, tested your knowledge with quizzes, showcased extraordinary scientific images, and more. To celebrate the upcoming new year, we’re highlighting five of our most popular posts from 2022. Check out the list below, and let us know in the comments section which of this year’s posts you liked best!

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Science Snippet: ATP’s Amazing Power

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A twisted, blue crystalline structure with a small yellow molecule inside it.
ATP (yellow) powering a protein (blue) that moves material within cells and helps them divide. Credit: Charles Sindelar, Yale University.

Just as electricity powers almost every modern gadget, the tiny molecule adenosine triphosphate (ATP) is the major source of energy for organisms’ biochemical reactions. ATP stores energy in the chemical bonds that hold its three phosphate groups together—the triphosphate part of its name. In the human body, ATP powers processes such as cell signaling, muscle contraction, nerve firing, and DNA and RNA synthesis. Because our cells are constantly using and producing ATP, each of us turns over roughly our body weight in the molecule every day!

Our bodies can produce ATP in several ways, but the most common is cellular respiration—a multistep process in which glucose molecules from our diet and oxygen react to form water and carbon dioxide. The breakdown of a single molecule of glucose in this way releases energy, which the body captures and stores in around 32 ATP molecules. Along with oxygen, mitochondria are crucial for producing ATP through cellular respiration, which is why they’re sometimes called the powerhouses of cells.

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In Other Words: Not All Cultures Are Human

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The word culture may make you think of a flag, style of clothing, celebration, or some other tradition associated with a particular group of people. But in biomedical science, a culture is a group of cells grown in a lab. Scientists use cultures to learn about basic biological processes and to develop and test new medicines.

Below the title “Culture: In Other Words,” two images are separated by a jagged line. On the left are outlines of faces surrounding a globe of the Earth. On the right is a hand holding a Petri dish with cells growing in it. Under the images, text reads: “Did you know? In biomedical science, a culture is a group of cells grown in a lab.”
Credit: NIGMS.

The Birth of a Culture

Scientists can grow many types of cells as cultures, from bacteria to human cells. To create a culture, a researcher adds cells to a container such as a Petri dish along with a mix of nutrients the cells need to grow and divide. The exact recipe varies depending on the cell type. (Because many lab containers were historically made of glass, researchers sometimes refer to studies that use cultures as in vitro—Latin for “in glass.”) Once the cells multiply and fill their container, researchers split the culture into new containers to produce more.

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Science Snippet: Lipids in the Limelight

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A large blue oval surrounded by small yellow circles.
Spheres of lipids (yellow) inside a cell. The nucleus is shown in blue. Credit: James Olzmann, University of California, Berkeley.

Have you ever wondered why your cells don’t spill into each other or what keeps your skin separate from your blood? The answer to both is lipids—a diverse group of organic compounds that don’t dissolve in water. They’re one of the four major building blocks of our bodies, along with proteins, carbohydrates, and nucleic acids. Types of lipids include:

  • Fats, necessary for our bodies’ long-term energy storage and insulation. Some essential vitamins are fat soluble, meaning they must be associated with fat molecules to be effectively absorbed.
  • Phospholipids, which make up a large part of cell and organelle membranes.
  • Waxes, which help protect delicate surfaces. For instance, earwax protects the skin of the ear canal.
  • Steroids, including cholesterol, a precursor to many hormones, which helps maintain the fluidity of cell membranes.
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In Other Words: How Cells Express Themselves

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When you encounter the word expression, you may think of a smile, a grimace, or another look on someone’s face. But when biologists talk about expression, they typically mean the process of gene expression—when the information in a gene directs protein synthesis. Proteins are essential for virtually every process in the human body.

Below the title “Expression: In Other Words,” two images are separated by a jagged line. On the left are several cartoon representations of a man with different facial expressions. On the right is a cartoon depiction of DNA and an arrow pointing to a folded protein. Under the images, text reads: Did you know? When biologists talk about expression, they’re typically referring to gene expression, where the information in a gene directs the building of a protein.
Credit: NIGMS.
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Science Snippet: RNA’s Remarkable Roles

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RNA, though less well known than its cousin DNA, is equally integral to our bodies. RNA molecules are long, usually single-stranded chains of nucleotides. (DNA molecules are also made up of nucleotides but are typically double-stranded.) There are three major types of RNA, which are all involved in protein synthesis:

  • Messenger RNA (mRNA) is complementary to one of the DNA strands of a gene and carries genetic information for protein synthesis to the ribosome—the molecular complex in which proteins are made.
  • Transfer RNA (tRNA) works with mRNA to make sure the right amino acids are inserted into the forming protein.
  • Ribosomal RNA (rRNA), together with proteins, makes up ribosomes and functions to recognize the mRNA and tRNA that are presented to the ribosomal complex.
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